MRIQC: individual T1w report

Summary

Subject ID: 033_ExercisePre.
Date and time: 2018-05-06, 23:04.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.273825135534788
cnr			4.550524720012314
efc			0.5932575009869896
fber			77.34131622314453
fwhm	avg		3.93913
fwhm	x		3.78076
fwhm	y		4.09054
fwhm	z		3.94609
icvs	csf		0.1829140568041327
icvs	gm		0.4788307831141221
icvs	wm		0.3382551600817452
inu	med		0.8102772235870361
inu	range		0.2881066858768462
qi	1		0.0
qi	2		0.0006574334760000218
rpve	csf		29.065146701087226
rpve	gm		12.981156263877018
rpve	wm		20.630509739453984
size	x		180
size	y		256
size	z		256
snr	csf		2.764645459767779
snr	gm		10.469347506706265
snr	total		11.559811668963484
snr	wm		21.445442040416406
snrd	csf		12.240024614638727
snrd	gm		23.810502058848392
snrd	total		24.41662020928376
snrd	wm		37.19933395436416
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.2771094937252476
summary	bg	mad	17.61168670654297
summary	bg	mean	59.68748092651367
summary	bg	median	57.830081939697266
summary	bg	n	2918454.0
summary	bg	p05	33.47399768829345
summary	bg	p95	92.46265144348146
summary	bg	stdv	18.541582107543945
summary	csf	k	0.3505090369217365
summary	csf	mad	129.0334930419922
summary	csf	mean	339.8283386230469
summary	csf	median	329.0421447753906
summary	csf	n	11625.0
summary	csf	p05	166.77776794433595
summary	csf	p95	536.5532592773437
summary	csf	stdv	119.01272583007812
summary	gm	k	0.4816336537041317
summary	gm	mad	56.91386413574219
summary	gm	mean	643.3540649414062
summary	gm	median	640.085205078125
summary	gm	n	42132.0
summary	gm	p05	548.0689697265625
summary	gm	p95	749.9454345703125
summary	gm	stdv	61.13825225830078
summary	wm	k	1.140841860653115
summary	wm	mad	41.64262771606445
summary	wm	mean	998.08447265625
summary	wm	median	1000.0101318359375
summary	wm	n	166060.0
summary	wm	p05	917.6649658203125
summary	wm	p95	1069.6371337890625
summary	wm	stdv	46.630287170410156
tpm	overlap	csf	0.21639369428157806
tpm	overlap	gm	0.5443375110626221
tpm	overlap	wm	0.5499956011772156
wm2max			0.7097651511759637

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	d225711da1a9852dbc9252d645ac1ed7
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.