MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.273825135534788
cnr4.550524720012314
efc0.5932575009869896
fber77.34131622314453
fwhmavg3.93913
fwhmx3.78076
fwhmy4.09054
fwhmz3.94609
icvscsf0.1829140568041327
icvsgm0.4788307831141221
icvswm0.3382551600817452
inumed0.8102772235870361
inurange0.2881066858768462
qi10.0
qi20.0006574334760000218
rpvecsf29.065146701087226
rpvegm12.981156263877018
rpvewm20.630509739453984
sizex180
sizey256
sizez256
snrcsf2.764645459767779
snrgm10.469347506706265
snrtotal11.559811668963484
snrwm21.445442040416406
snrdcsf12.240024614638727
snrdgm23.810502058848392
snrdtotal24.41662020928376
snrdwm37.19933395436416
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.2771094937252476
summarybgmad17.61168670654297
summarybgmean59.68748092651367
summarybgmedian57.830081939697266
summarybgn2918454.0
summarybgp0533.47399768829345
summarybgp9592.46265144348146
summarybgstdv18.541582107543945
summarycsfk0.3505090369217365
summarycsfmad129.0334930419922
summarycsfmean339.8283386230469
summarycsfmedian329.0421447753906
summarycsfn11625.0
summarycsfp05166.77776794433595
summarycsfp95536.5532592773437
summarycsfstdv119.01272583007812
summarygmk0.4816336537041317
summarygmmad56.91386413574219
summarygmmean643.3540649414062
summarygmmedian640.085205078125
summarygmn42132.0
summarygmp05548.0689697265625
summarygmp95749.9454345703125
summarygmstdv61.13825225830078
summarywmk1.140841860653115
summarywmmad41.64262771606445
summarywmmean998.08447265625
summarywmmedian1000.0101318359375
summarywmn166060.0
summarywmp05917.6649658203125
summarywmp951069.6371337890625
summarywmstdv46.630287170410156
tpmoverlapcsf0.21639369428157806
tpmoverlapgm0.5443375110626221
tpmoverlapwm0.5499956011772156
wm2max0.7097651511759637

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumd225711da1a9852dbc9252d645ac1ed7
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.